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- Clostridium cochlearium
- Clostridium difficile
- Clostridium fallax
- Clostridium glycolicum
- Clostridium hastiforme
- Clostridium histolyticum
- Clostridium innocuum
- Clostridium leptum
- Clostridium malenominatum
- Clostridium novyi
- Clostridium oroticum
- Clostridium paraputrificum
- Clostridium pasteurianum
- Clostridium perfringens
- Clostridium putrificum
- Clostridium ramosum
- Clostridium septicum
- Clostridium sordellii
- Clostridium sp.
- Clostridium species
- Clostridium sphenoides
- Clostridium spiroforme
- Clostridium sporogenes
- Clostridium spp.
- Clostridium subterminale
- Clostridium symbiosum
- Clostridium tertium
- Clostridium tetani
- Coccidioides immitis
- Coccidioides immunity
- Cochliobolus heterostrophus
- Cochliobolus miyabeanus
- Colletotrichum capsici
- Colletotrichum coccodes
- Colletotrichum gloeosporioides
- Colletotrichum lagenarium
- Colletotrichum orbiculare
- Collinsella aerofaciens
- Comamonas acidovorans
- Comamonas spp.
- Coniothyrium minitans
- Coprinus spp.
- Corynebacterium
- Corynebacterium accolens
- Corynebacterium afermentans
- Corynebacterium ammoniagenes
- Corynebacterium amycolatum
- Corynebacterium aquaticum
- Corynebacterium argentoratense
- Corynebacterium auris
- Corynebacterium bovis