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- Monilinia fructicola
- Moraxella catarrhalis
- Moraxella osloensis
- Moraxella sp.
- Moraxella spp.
- Morganella morganii
- Morganella spp.
- Mortierella alpina
- Mucor circinelloides
- Mucor hiemalis
- Mucor indicus
- Mucor mucedo
- Mucor racemosus
- Mucor rouxii
- Mucor sp.
- Mucor spp.
- Mycobacteria
- Mycobacterium
- Mycobacterium abscessus
- Mycobacterium africanum
- Mycobacterium aurum
- Mycobacterium avium
- Mycobacterium avium complex
- Mycobacterium avium subsp. paratuberculosis
- Mycobacterium avium-intracellulare complex
- Mycobacterium bovis
- Mycobacterium chelonae
- Mycobacterium fortuitum
- Mycobacterium goodii
- Mycobacterium gordonae
- Mycobacterium intracellulare
- Mycobacterium kansasii
- Mycobacterium lentiflavum
- Mycobacterium malmoense
- Mycobacterium marinum
- Mycobacterium microti
- Mycobacterium mucogenicum
- Mycobacterium paratuberculosis
- Mycobacterium peregrinum
- Mycobacterium phlei
- Mycobacterium scrofulaceum
- Mycobacterium segmentis
- Mycobacterium simiae
- Mycobacterium smegmatis
- Mycobacterium tuberculosis
- Mycobacterium tuberculosis var. bovis
- Mycobacterium tuberculosis var. hominis
- Mycobacterium ulcerans
- Mycobacterium vaccae
- Mycobacterium wolinskyi
- Mycobacterium xenopi